| Tým | Z | V | R | P | Sk. | B | |
|---|---|---|---|---|---|---|---|
| 1. | 1. SK Prostějov | 8 | 6 | 1 | 1 | 27:16 | 19 |
| 2. | FK Fotbal Třinec | 7 | 5 | 2 | 0 | 24:8 | 17 |
| 3. | 1. FC Slovácko B | 8 | 5 | 0 | 3 | 17:11 | 15 |
| 4. | FK Slavia Orlová – Lutyně | 8 | 4 | 3 | 1 | 17:13 | 15 |
| 5. | MSK Břeclav | 8 | 4 | 2 | 2 | 19:11 | 14 |
| 6. | MFK Frýdek-Místek | 8 | 4 | 2 | 2 | 12:6 | 14 |
| 7. | FC Hlučín | 8 | 3 | 4 | 1 | 12:8 | 13 |
| 8. | FK Sulko Zábřeh | 8 | 4 | 1 | 3 | 16:15 | 13 |
| 9. | SK Sigma Olomouc B | 8 | 3 | 2 | 3 | 14:15 | 11 |
| 10. | SK HS Kroměříž | 8 | 2 | 2 | 4 | 10:15 | 8 |
| 11. | FC Slovan Rosice | 8 | 1 | 4 | 3 | 8:13 | 7 |
| 12. | FC Fastav Zlín B | 8 | 1 | 4 | 3 | 8:14 | 7 |
| 13. | SK Uničov | 8 | 2 | 1 | 5 | 13:20 | 7 |
| 14. | SK Spartak Hulín | 8 | 1 | 3 | 4 | 8:14 | 6 |
| 15. | FC Baník Ostrava B | 7 | 1 | 1 | 5 | 5:10 | 4 |
| 16. | FC ŽĎAS Žďár n.Sázavou | 8 | 0 | 2 | 6 | 5:26 | 2 |
Stav: 23.09.2012